MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.271947223257786
cnr4.469151677951823
efc0.5830175714898691
fber104.5616226196289
fwhmavg4.1191933333333335
fwhmx3.89045
fwhmy4.36394
fwhmz4.10319
icvscsf0.19335819540252747
icvsgm0.4684699756928325
icvswm0.33817182890464004
inumed0.7879089117050171
inurange0.25930255651473977
qi10.0
qi20.0016343391032916832
rpvecsf25.684188683554087
rpvegm12.185652955114483
rpvewm19.303834545837947
sizex180
sizey256
sizez256
snrcsf2.618844703013041
snrgm10.46799128110354
snrtotal9.615605977181094
snrwm15.759981947426699
snrdcsf13.514767640250794
snrdgm27.258763595503325
snrdtotal28.51414595683541
snrdwm44.768906634752106
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.8078310448914277
summarybgmad14.633859634399414
summarybgmean46.64576721191406
summarybgmedian44.595184326171875
summarybgn3203471.0
summarybgp0525.44497299194336
summarybgp9575.005126953125
summarybgstdv15.805094718933105
summarycsfk0.875142101370693
summarycsfmad121.7108383178711
summarycsfmean310.5670471191406
summarycsfmedian301.8809814453125
summarycsfn13409.0
summarycsfp05139.7668670654297
summarycsfp95505.239306640625
summarycsfstdv115.26828002929688
summarygmk0.14603725028862158
summarygmmad57.37763214111328
summarygmmean609.095947265625
summarygmmedian608.8822631835938
summarygmn43814.0
summarygmp05513.2102447509766
summarygmp95704.3197448730468
summarygmstdv58.16543960571289
summarywmk1.2018033506689534
summarywmmad48.988040924072266
summarywmmean989.212646484375
summarywmmedian1000.0084228515625
summarywmn182016.0
summarywmp05856.5211486816406
summarywmp951072.333251953125
summarywmstdv63.45220947265625
tpmoverlapcsf0.2025691717863083
tpmoverlapgm0.5352903008460999
tpmoverlapwm0.5466902256011963
wm2max0.7323295668502408

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumd6c74163396736ab9d4d4a53a3904544
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.