MRIQC: individual T1w report

Summary

Subject ID: 058_ExercisePre.
Date and time: 2018-05-07, 01:24.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.271947223257786
cnr			4.469151677951823
efc			0.5830175714898691
fber			104.5616226196289
fwhm	avg		4.1191933333333335
fwhm	x		3.89045
fwhm	y		4.36394
fwhm	z		4.10319
icvs	csf		0.19335819540252747
icvs	gm		0.4684699756928325
icvs	wm		0.33817182890464004
inu	med		0.7879089117050171
inu	range		0.25930255651473977
qi	1		0.0
qi	2		0.0016343391032916832
rpve	csf		25.684188683554087
rpve	gm		12.185652955114483
rpve	wm		19.303834545837947
size	x		180
size	y		256
size	z		256
snr	csf		2.618844703013041
snr	gm		10.46799128110354
snr	total		9.615605977181094
snr	wm		15.759981947426699
snrd	csf		13.514767640250794
snrd	gm		27.258763595503325
snrd	total		28.51414595683541
snrd	wm		44.768906634752106
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.8078310448914277
summary	bg	mad	14.633859634399414
summary	bg	mean	46.64576721191406
summary	bg	median	44.595184326171875
summary	bg	n	3203471.0
summary	bg	p05	25.44497299194336
summary	bg	p95	75.005126953125
summary	bg	stdv	15.805094718933105
summary	csf	k	0.875142101370693
summary	csf	mad	121.7108383178711
summary	csf	mean	310.5670471191406
summary	csf	median	301.8809814453125
summary	csf	n	13409.0
summary	csf	p05	139.7668670654297
summary	csf	p95	505.239306640625
summary	csf	stdv	115.26828002929688
summary	gm	k	0.14603725028862158
summary	gm	mad	57.37763214111328
summary	gm	mean	609.095947265625
summary	gm	median	608.8822631835938
summary	gm	n	43814.0
summary	gm	p05	513.2102447509766
summary	gm	p95	704.3197448730468
summary	gm	stdv	58.16543960571289
summary	wm	k	1.2018033506689534
summary	wm	mad	48.988040924072266
summary	wm	mean	989.212646484375
summary	wm	median	1000.0084228515625
summary	wm	n	182016.0
summary	wm	p05	856.5211486816406
summary	wm	p95	1072.333251953125
summary	wm	stdv	63.45220947265625
tpm	overlap	csf	0.2025691717863083
tpm	overlap	gm	0.5352903008460999
tpm	overlap	wm	0.5466902256011963
wm2max			0.7323295668502408

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	d6c74163396736ab9d4d4a53a3904544
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.